Class: MeasuredPhysiologicalFields

Fields applied to all measured physiological variable types (discrete and continuous). Captures biological subject identification and experimental design information for organism response field studies.

URI: oae:MeasuredPhysiologicalFields

 classDiagram
    class MeasuredPhysiologicalFields
    click MeasuredPhysiologicalFields href "../MeasuredPhysiologicalFields"
      MeasuredPhysiologicalFields <|-- DiscretePhysiologicalVariable
        click DiscretePhysiologicalVariable href "../DiscretePhysiologicalVariable"
      MeasuredPhysiologicalFields <|-- ContinuousPhysiologicalVariable
        click ContinuousPhysiologicalVariable href "../ContinuousPhysiologicalVariable"

      MeasuredPhysiologicalFields : biological_subject

      MeasuredPhysiologicalFields : life_stage




    MeasuredPhysiologicalFields --> "0..1" LifeStage : life_stage
    click LifeStage href "../LifeStage"


      MeasuredPhysiologicalFields : life_stage_custom

      MeasuredPhysiologicalFields : species_identification_code

      MeasuredPhysiologicalFields : taxonomic_code_system




    MeasuredPhysiologicalFields --> "0..1" TaxonomicCodeSystem : taxonomic_code_system
    click TaxonomicCodeSystem href "../TaxonomicCodeSystem"

Slots

Name	Cardinality and Range	Description	Inheritance
biological_subject	1 String	Taxonomy (species, genus, or community) being studied (e	direct
species_identification_code	0..1 String	Species reference code from a taxonomic database (e	direct
taxonomic_code_system	0..1 TaxonomicCodeSystem	Which taxonomic code system the identification code refers to	direct
life_stage	0..1 LifeStage	Life stage of the organism at time of measurement	direct
life_stage_custom	0..1 String	Custom life stage description when "other" is selected	direct

Mixin Usage

mixed into	description
DiscretePhysiologicalVariable	Physiological response variable from discrete field samples (e
ContinuousPhysiologicalVariable	Physiological response variable from continuous autonomous field sensors (e

Identifier and Mapping Information

Schema Source

from schema: https://schema.oaedata.org/OAEDataSchema

Mappings

Mapping Type	Mapped Value
self	oae:MeasuredPhysiologicalFields
native	oae:MeasuredPhysiologicalFields

LinkML Source

Direct

name: MeasuredPhysiologicalFields
description: Fields applied to all measured physiological variable types (discrete
  and continuous). Captures biological subject identification and experimental design
  information for organism response field studies.
from_schema: https://schema.oaedata.org/OAEDataSchema
mixin: true
attributes:
  biological_subject:
    name: biological_subject
    description: Taxonomy (species, genus, or community) being studied (e.g., Crassostrea
      gigas, coral reef community).
    title: Biological Subject
    from_schema: Variable
    rank: 1000
    domain_of:
    - MeasuredPhysiologicalFields
    range: string
    required: true
  species_identification_code:
    name: species_identification_code
    description: Species reference code from a taxonomic database (e.g., WoRMS AphiaID
      140656, ITIS TSN 79861).
    title: Species Identification Code
    from_schema: Variable
    rank: 1000
    domain_of:
    - MeasuredPhysiologicalFields
    range: string
  taxonomic_code_system:
    name: taxonomic_code_system
    description: Which taxonomic code system the identification code refers to.
    title: Taxonomic Code System
    from_schema: Variable
    rank: 1000
    domain_of:
    - MeasuredPhysiologicalFields
    range: TaxonomicCodeSystem
  life_stage:
    name: life_stage
    description: Life stage of the organism at time of measurement.
    title: Life Stage
    from_schema: Variable
    rank: 1000
    domain_of:
    - MeasuredPhysiologicalFields
    range: LifeStage
  life_stage_custom:
    name: life_stage_custom
    description: Custom life stage description when "other" is selected.
    title: Life Stage (custom)
    from_schema: Variable
    rank: 1000
    domain_of:
    - MeasuredPhysiologicalFields
    range: string

Induced

name: MeasuredPhysiologicalFields
description: Fields applied to all measured physiological variable types (discrete
  and continuous). Captures biological subject identification and experimental design
  information for organism response field studies.
from_schema: https://schema.oaedata.org/OAEDataSchema
mixin: true
attributes:
  biological_subject:
    name: biological_subject
    description: Taxonomy (species, genus, or community) being studied (e.g., Crassostrea
      gigas, coral reef community).
    title: Biological Subject
    from_schema: Variable
    rank: 1000
    alias: biological_subject
    owner: MeasuredPhysiologicalFields
    domain_of:
    - MeasuredPhysiologicalFields
    range: string
    required: true
  species_identification_code:
    name: species_identification_code
    description: Species reference code from a taxonomic database (e.g., WoRMS AphiaID
      140656, ITIS TSN 79861).
    title: Species Identification Code
    from_schema: Variable
    rank: 1000
    alias: species_identification_code
    owner: MeasuredPhysiologicalFields
    domain_of:
    - MeasuredPhysiologicalFields
    range: string
  taxonomic_code_system:
    name: taxonomic_code_system
    description: Which taxonomic code system the identification code refers to.
    title: Taxonomic Code System
    from_schema: Variable
    rank: 1000
    alias: taxonomic_code_system
    owner: MeasuredPhysiologicalFields
    domain_of:
    - MeasuredPhysiologicalFields
    range: TaxonomicCodeSystem
  life_stage:
    name: life_stage
    description: Life stage of the organism at time of measurement.
    title: Life Stage
    from_schema: Variable
    rank: 1000
    alias: life_stage
    owner: MeasuredPhysiologicalFields
    domain_of:
    - MeasuredPhysiologicalFields
    range: LifeStage
  life_stage_custom:
    name: life_stage_custom
    description: Custom life stage description when "other" is selected.
    title: Life Stage (custom)
    from_schema: Variable
    rank: 1000
    alias: life_stage_custom
    owner: MeasuredPhysiologicalFields
    domain_of:
    - MeasuredPhysiologicalFields
    range: string